Detailed information of SNP:
|
SNP ID:
sf0805103632(Gbrowse)
Chromosome: chr08 Position: 5103632 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 77.01% | 22.99% |
| All Indica | 799 | 80.98% | 19.02% |
| All Japonica | 496 | 66.53% | 33.47% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 213 | 48.83% | 51.17% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 335 | 78.81% | 21.19% |
| Tropical Japonica | 93 | 33.33% | 66.67% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805103632 | A->G | INTERGENIC | None |