Detailed information of SNP:
|
SNP ID:
sf0805107532(Gbrowse)
Chromosome: chr08 Position: 5107532 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 56.33% | 43.67% |
| All Indica | 797 | 80.55% | 19.45% |
| All Japonica | 495 | 21.62% | 78.38% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 374 | 95.45% | 4.55% |
| Indica II | 213 | 57.75% | 42.25% |
| Indica Intermediate | 210 | 77.14% | 22.86% |
| Temperate Japonica | 333 | 13.51% | 86.49% |
| Tropical Japonica | 94 | 27.66% | 72.34% |
| Japonica Intermediate | 68 | 52.94% | 47.06% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 40 | 45.00% | 55.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805107532 | G->A | INTERGENIC | None |