Detailed information of SNP:
|
SNP ID:
sf0805114591(Gbrowse)
Chromosome: chr08 Position: 5114591 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 79.49% | 20.51% |
| All Indica | 799 | 97.37% | 2.63% |
| All Japonica | 494 | 46.15% | 53.85% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 333 | 27.93% | 72.07% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 67 | 67.16% | 32.84% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805114591 | A->G | LOC_Os08g08820(LOC_Os08g08820.2) | INTRON |
| sf0805114591 | A->G | LOC_Os08g08820(LOC_Os08g08820.1) | INTRON |