Detailed information of SNP:
|
SNP ID:
sf0805134923(Gbrowse)
Chromosome: chr08 Position: 5134923 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1216 | 66.53% | 33.47% |
| All Indica | 630 | 45.71% | 54.29% |
| All Japonica | 482 | 90.25% | 9.75% |
| Aus | 54 | 83.33% | 16.67% |
| Indica I | 268 | 18.66% | 81.34% |
| Indica II | 197 | 82.74% | 17.26% |
| Indica Intermediate | 165 | 45.45% | 54.55% |
| Temperate Japonica | 334 | 97.90% | 2.10% |
| Tropical Japonica | 82 | 62.20% | 37.80% |
| Japonica Intermediate | 66 | 86.36% | 13.64% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 37 | 78.38% | 21.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805134923 | G->A | INTERGENIC | None |