Detailed information of SNP:
|
SNP ID:
sf0805154221(Gbrowse)
Chromosome: chr08 Position: 5154221 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 70.41% | 29.59% |
| All Indica | 788 | 89.59% | 10.41% |
| All Japonica | 496 | 46.57% | 53.43% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 374 | 92.78% | 7.22% |
| Indica II | 212 | 83.49% | 16.51% |
| Indica Intermediate | 202 | 90.10% | 9.90% |
| Temperate Japonica | 335 | 28.66% | 71.34% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 67 | 67.16% | 32.84% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805154221 | A->G | LOC_Os08g08870(LOC_Os08g08870.1) | Non-Synonymous SNP |