Detailed information of SNP:
|
SNP ID:
sf0805154492(Gbrowse)
Chromosome: chr08 Position: 5154492 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 72.51% | 27.49% |
| All Indica | 794 | 95.84% | 4.16% |
| All Japonica | 494 | 31.38% | 68.62% |
| Aus | 65 | 95.38% | 4.62% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 209 | 95.69% | 4.31% |
| Indica Intermediate | 210 | 90.48% | 9.52% |
| Temperate Japonica | 334 | 21.56% | 78.44% |
| Tropical Japonica | 93 | 53.76% | 46.24% |
| Japonica Intermediate | 67 | 49.25% | 50.75% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805154492 | A->G | LOC_Os08g08870(LOC_Os08g08870.1) | Non-Synonymous SNP |