Detailed information of SNP:
|
SNP ID:
sf0805181141(Gbrowse)
Chromosome: chr08 Position: 5181141 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1353 | 89.43% | 10.57% |
| All Indica | 755 | 95.23% | 4.77% |
| All Japonica | 475 | 78.32% | 21.68% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 366 | 98.63% | 1.37% |
| Indica II | 183 | 84.15% | 15.85% |
| Indica Intermediate | 206 | 99.03% | 0.97% |
| Temperate Japonica | 322 | 90.99% | 9.01% |
| Tropical Japonica | 91 | 49.45% | 50.55% |
| Japonica Intermediate | 62 | 54.84% | 45.16% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805181141 | C->T | INTERGENIC | None |