Detailed information of SNP:
|
SNP ID:
sf0805182410(Gbrowse)
Chromosome: chr08 Position: 5182410 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 83.37% | 16.63% |
| All Indica | 799 | 87.98% | 12.02% |
| All Japonica | 497 | 72.84% | 27.16% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 213 | 69.01% | 30.99% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 86.27% | 13.73% |
| Tropical Japonica | 94 | 45.74% | 54.26% |
| Japonica Intermediate | 68 | 44.12% | 55.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805182410 | G->A | INTERGENIC | None |