Detailed information of SNP:
|
SNP ID:
sf0805194007(Gbrowse)
Chromosome: chr08 Position: 5194007 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 53.89% | 46.11% |
| All Indica | 797 | 81.93% | 18.07% |
| All Japonica | 495 | 0.40% | 99.60% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 212 | 47.17% | 52.83% |
| Indica Intermediate | 210 | 93.81% | 6.19% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 92 | 2.17% | 97.83% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805194007 | C->T | INTERGENIC | None |