Detailed information of SNP:
|
SNP ID:
sf0805208313(Gbrowse)
Chromosome: chr08 Position: 5208313 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 79.04% | 20.96% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 495 | 41.62% | 58.38% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 34.43% | 65.57% |
| Tropical Japonica | 93 | 54.84% | 45.16% |
| Japonica Intermediate | 68 | 58.82% | 41.18% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805208313 | C->T | LOC_Os08g08960(LOC_Os08g08960.1) | UTR_3_PRIME |