Detailed information of SNP:
|
SNP ID:
sf0805227027(Gbrowse)
Chromosome: chr08 Position: 5227027 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 65.49% | 34.51% |
| All Indica | 799 | 88.36% | 11.64% |
| All Japonica | 495 | 21.62% | 78.38% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 94.67% | 5.33% |
| Indica II | 213 | 70.89% | 29.11% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 334 | 7.19% | 92.81% |
| Tropical Japonica | 94 | 57.45% | 42.55% |
| Japonica Intermediate | 67 | 43.28% | 56.72% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805227027 | A->G | INTERGENIC | None |