Detailed information of SNP:
|
SNP ID:
sf0805282947(Gbrowse)
Chromosome: chr08 Position: 5282947 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 67.63% | 32.37% |
| All Indica | 798 | 50.75% | 49.25% |
| All Japonica | 497 | 89.54% | 10.46% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 48.80% | 51.20% |
| Indica II | 213 | 52.58% | 47.42% |
| Indica Intermediate | 210 | 52.38% | 47.62% |
| Temperate Japonica | 335 | 95.82% | 4.18% |
| Tropical Japonica | 94 | 64.89% | 35.11% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805282947 | A->G | INTERGENIC | None |