Detailed information of SNP:
|
SNP ID:
sf0805287338(Gbrowse)
Chromosome: chr08 Position: 5287338 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 93.97% | 6.03% |
| All Indica | 791 | 94.69% | 5.31% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 65.15% | 34.85% |
| Indica I | 374 | 98.13% | 1.87% |
| Indica II | 211 | 89.57% | 10.43% |
| Indica Intermediate | 206 | 93.69% | 6.31% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805287338 | G->A | INTERGENIC | None |