Detailed information of SNP:
|
SNP ID:
sf0805320571(Gbrowse)
Chromosome: chr08 Position: 5320571 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 78.37% | 21.63% |
| All Indica | 799 | 97.37% | 2.63% |
| All Japonica | 497 | 50.91% | 49.09% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 42.99% | 57.01% |
| Tropical Japonica | 94 | 62.77% | 37.23% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805320571 | G->A | INTERGENIC | None |