Detailed information of SNP:
|
SNP ID:
sf0805341738(Gbrowse)
Chromosome: chr08 Position: 5341738 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 92.52% | 7.48% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 495 | 79.19% | 20.81% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 92 | 11.96% | 88.04% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805341738 | G->A | LOC_Os08g09210(LOC_Os08g09210.1) | INTRON |
| sf0805341738 | G->A | LOC_Os08g09210(LOC_Os08g09210.2) | INTRON |