Detailed information of SNP:
|
SNP ID:
sf0805347699(Gbrowse)
Chromosome: chr08 Position: 5347699 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 59.01% | 40.99% |
| All Indica | 797 | 46.17% | 53.83% |
| All Japonica | 496 | 72.38% | 27.62% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 48.93% | 51.07% |
| Indica II | 212 | 42.45% | 57.55% |
| Indica Intermediate | 211 | 45.02% | 54.98% |
| Temperate Japonica | 335 | 92.24% | 7.76% |
| Tropical Japonica | 93 | 7.53% | 92.47% |
| Japonica Intermediate | 68 | 63.24% | 36.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805347699 | G->C | INTERGENIC | None |