Detailed information of SNP:
SNP ID:
sf0805391003(Gbrowse)
Chromosome: chr08 Position: 5391003 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
---|---|---|---|
All | 1239 | 61.74% | 38.26% |
All Indica | 794 | 61.34% | 38.66% |
All Japonica | 324 | 65.43% | 34.57% |
Aus | 67 | 41.79% | 58.21% |
Indica I | 374 | 52.67% | 47.33% |
Indica II | 213 | 82.16% | 17.84% |
Indica Intermediate | 207 | 55.56% | 44.44% |
Temperate Japonica | 190 | 93.68% | 6.32% |
Tropical Japonica | 93 | 10.75% | 89.25% |
Japonica Intermediate | 41 | 58.54% | 41.46% |
Group VI/Aromatic | 14 | 78.57% | 21.43% |
Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0805391003 | A->G | INTERGENIC | None |