Detailed information of SNP:
|
SNP ID:
sf0805391003(Gbrowse)
Chromosome: chr08 Position: 5391003 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1239 | 61.74% | 38.26% |
| All Indica | 794 | 61.34% | 38.66% |
| All Japonica | 324 | 65.43% | 34.57% |
| Aus | 67 | 41.79% | 58.21% |
| Indica I | 374 | 52.67% | 47.33% |
| Indica II | 213 | 82.16% | 17.84% |
| Indica Intermediate | 207 | 55.56% | 44.44% |
| Temperate Japonica | 190 | 93.68% | 6.32% |
| Tropical Japonica | 93 | 10.75% | 89.25% |
| Japonica Intermediate | 41 | 58.54% | 41.46% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805391003 | A->G | INTERGENIC | None |