Detailed information of SNP:
|
SNP ID:
sf0805392126(Gbrowse)
Chromosome: chr08 Position: 5392126 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1257 | 79.71% | 20.29% |
| All Indica | 799 | 93.37% | 6.63% |
| All Japonica | 339 | 41.30% | 58.70% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 77.46% | 22.54% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 202 | 16.83% | 83.17% |
| Tropical Japonica | 93 | 91.40% | 8.60% |
| Japonica Intermediate | 44 | 47.73% | 52.27% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 92.11% | 7.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805392126 | C->T | INTERGENIC | None |