Detailed information of SNP:
|
SNP ID:
sf0805414605(Gbrowse)
Chromosome: chr08 Position: 5414605 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1277 | 70.09% | 29.91% |
| All Indica | 796 | 99.50% | 0.50% |
| All Japonica | 395 | 5.57% | 94.43% |
| Aus | 41 | 100.00% | 0.00% |
| Indica I | 372 | 100.00% | 0.00% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 330 | 2.73% | 97.27% |
| Tropical Japonica | 14 | 35.71% | 64.29% |
| Japonica Intermediate | 51 | 15.69% | 84.31% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 31 | 83.87% | 16.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805414605 | A->G | INTERGENIC | None |