Detailed information of SNP:
|
SNP ID:
sf0805424073(Gbrowse)
Chromosome: chr08 Position: 5424073 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 63.21% | 36.79% |
| All Indica | 799 | 99.12% | 0.88% |
| All Japonica | 497 | 5.84% | 94.16% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 4.48% | 95.52% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805424073 | A->C | LOC_Os08g09350(LOC_Os08g09350.1) | INTRON |