Detailed information of SNP:
|
SNP ID:
sf0805424643(Gbrowse)
Chromosome: chr08 Position: 5424643 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 63.35% | 36.65% |
| All Indica | 799 | 99.00% | 1.00% |
| All Japonica | 497 | 6.04% | 93.96% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 4.48% | 95.52% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805424643 | C->T | LOC_Os08g09350(LOC_Os08g09350.1) | INTRON |