Detailed information of SNP:
|
SNP ID:
sf0805434617(Gbrowse)
Chromosome: chr08 Position: 5434617 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 83.01% | 16.99% |
| All Indica | 793 | 94.96% | 5.04% |
| All Japonica | 497 | 60.76% | 39.24% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 207 | 87.44% | 12.56% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 50.15% | 49.85% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805434617 | T->C | LOC_Os08g09370(LOC_Os08g09370.1) | UTR_5_PRIME |