Detailed information of SNP:
|
SNP ID:
sf0805468576(Gbrowse)
Chromosome: chr08 Position: 5468576 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1299 | 96.84% | 3.16% |
| All Indica | 686 | 94.46% | 5.54% |
| All Japonica | 495 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 329 | 96.66% | 3.34% |
| Indica II | 179 | 90.50% | 9.50% |
| Indica Intermediate | 178 | 94.38% | 5.62% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 94.59% | 5.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805468576 | C->T | INTERGENIC | None |