Detailed information of SNP:
|
SNP ID:
sf0805484089(Gbrowse)
Chromosome: chr08 Position: 5484089 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1346 | 63.52% | 36.48% |
| All Indica | 734 | 97.28% | 2.72% |
| All Japonica | 494 | 7.69% | 92.31% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 341 | 98.83% | 1.17% |
| Indica II | 198 | 94.95% | 5.05% |
| Indica Intermediate | 195 | 96.92% | 3.08% |
| Temperate Japonica | 334 | 1.50% | 98.50% |
| Tropical Japonica | 92 | 20.65% | 79.35% |
| Japonica Intermediate | 68 | 20.59% | 79.41% |
| Group VI/Aromatic | 10 | 90.00% | 10.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805484089 | C->T | INTERGENIC | None |