Detailed information of SNP:
|
SNP ID:
sf0805494217(Gbrowse)
Chromosome: chr08 Position: 5494217 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 58.30% | 41.70% |
| All Indica | 787 | 87.17% | 12.83% |
| All Japonica | 495 | 5.66% | 94.34% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 88.14% | 11.86% |
| Indica II | 208 | 83.17% | 16.83% |
| Indica Intermediate | 208 | 89.42% | 10.58% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 19.15% | 80.85% |
| Japonica Intermediate | 66 | 7.58% | 92.42% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805494217 | T->C | INTERGENIC | None |