Detailed information of SNP:
|
SNP ID:
sf0805495356(Gbrowse)
Chromosome: chr08 Position: 5495356 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1374 | 95.34% | 4.66% |
| All Indica | 759 | 91.57% | 8.43% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 63 | 100.00% | 0.00% |
| Indica I | 350 | 90.29% | 9.71% |
| Indica II | 209 | 94.26% | 5.74% |
| Indica Intermediate | 200 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805495356 | A->C | LOC_Os08g09490(LOC_Os08g09490.1) | Non-Synonymous SNP |