Detailed information of SNP:
|
SNP ID:
sf0805497948(Gbrowse)
Chromosome: chr08 Position: 5497948 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1381 | 94.71% | 5.29% |
| All Indica | 764 | 90.97% | 9.03% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 353 | 90.08% | 9.92% |
| Indica II | 207 | 91.30% | 8.70% |
| Indica Intermediate | 204 | 92.16% | 7.84% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805497948 | G->A | LOC_Os08g09500(LOC_Os08g09500.1) | Non-Synonymous SNP |