Detailed information of SNP:
|
SNP ID:
sf0805512307(Gbrowse)
Chromosome: chr08 Position: 5512307 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1363 | 56.05% | 43.95% |
| All Indica | 754 | 86.74% | 13.26% |
| All Japonica | 491 | 5.09% | 94.91% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 355 | 88.17% | 11.83% |
| Indica II | 201 | 85.07% | 14.93% |
| Indica Intermediate | 198 | 85.86% | 14.14% |
| Temperate Japonica | 330 | 1.52% | 98.48% |
| Tropical Japonica | 93 | 16.13% | 83.87% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 13 | 53.85% | 46.15% |
| Intermediate | 38 | 68.42% | 31.58% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805512307 | A->G | LOC_Os08g09510(LOC_Os08g09510.1) | INTRON |