Detailed information of SNP:
|
SNP ID:
sf0805515082(Gbrowse)
Chromosome: chr08 Position: 5515082 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1368 | 94.23% | 5.77% |
| All Indica | 755 | 91.79% | 8.21% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 61 | 83.61% | 16.39% |
| Indica I | 346 | 91.33% | 8.67% |
| Indica II | 211 | 95.73% | 4.27% |
| Indica Intermediate | 198 | 88.38% | 11.62% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805515082 | T->C | INTERGENIC | None |