Detailed information of SNP:
|
SNP ID:
sf0805524341(Gbrowse)
Chromosome: chr08 Position: 5524341 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 64.06% | 35.94% |
| All Indica | 790 | 96.71% | 3.29% |
| All Japonica | 492 | 5.28% | 94.72% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 97.58% | 2.42% |
| Indica II | 211 | 93.84% | 6.16% |
| Indica Intermediate | 207 | 98.07% | 1.93% |
| Temperate Japonica | 333 | 1.80% | 98.20% |
| Tropical Japonica | 91 | 15.38% | 84.62% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805524341 | A->G | LOC_Os08g09530(LOC_Os08g09530.1) | Non-Synonymous SNP |