Detailed information of SNP:
|
SNP ID:
sf0805527300(Gbrowse)
Chromosome: chr08 Position: 5527300 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 94.43% | 5.57% |
| All Indica | 798 | 93.23% | 6.77% |
| All Japonica | 497 | 95.57% | 4.43% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 92.25% | 7.75% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805527300 | G->A | INTERGENIC | None |