Detailed information of SNP:
|
SNP ID:
sf0805545105(Gbrowse)
Chromosome: chr08 Position: 5545105 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 73.74% | 26.26% |
| All Indica | 794 | 64.86% | 35.14% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 373 | 73.46% | 26.54% |
| Indica II | 211 | 53.08% | 46.92% |
| Indica Intermediate | 210 | 61.43% | 38.57% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805545105 | G->A | LOC_Os08g09570(LOC_Os08g09570.1) | UTR_3_PRIME |