Detailed information of SNP:
|
SNP ID:
sf0805545682(Gbrowse)
Chromosome: chr08 Position: 5545682 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 84.85% | 15.15% |
| All Indica | 793 | 83.23% | 16.77% |
| All Japonica | 497 | 96.98% | 3.02% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 374 | 80.48% | 19.52% |
| Indica II | 211 | 94.79% | 5.21% |
| Indica Intermediate | 208 | 76.44% | 23.56% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805545682 | G->A | INTERGENIC | None |