Detailed information of SNP:
|
SNP ID:
sf0805547047(Gbrowse)
Chromosome: chr08 Position: 5547047 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1409 | 73.31% | 26.69% |
| All Indica | 792 | 64.39% | 35.61% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 72.99% | 27.01% |
| Indica II | 208 | 51.44% | 48.56% |
| Indica Intermediate | 210 | 61.90% | 38.10% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 12 | 75.00% | 25.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805547047 | A->G | INTERGENIC | None |