Detailed information of SNP:
|
SNP ID:
sf0805547085(Gbrowse)
Chromosome: chr08 Position: 5547085 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1204 | 70.43% | 29.57% |
| All Indica | 684 | 71.05% | 28.95% |
| All Japonica | 403 | 61.79% | 38.21% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 326 | 57.98% | 42.02% |
| Indica II | 178 | 91.01% | 8.99% |
| Indica Intermediate | 180 | 75.00% | 25.00% |
| Temperate Japonica | 292 | 50.68% | 49.32% |
| Tropical Japonica | 59 | 96.61% | 3.39% |
| Japonica Intermediate | 52 | 84.62% | 15.38% |
| Group VI/Aromatic | 11 | 90.91% | 9.09% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805547085 | G->A | INTERGENIC | None |