Detailed information of SNP:
|
SNP ID:
sf0805547989(Gbrowse)
Chromosome: chr08 Position: 5547989 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 73.17% | 26.83% |
| All Indica | 793 | 64.19% | 35.81% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 373 | 73.19% | 26.81% |
| Indica II | 210 | 51.43% | 48.57% |
| Indica Intermediate | 210 | 60.95% | 39.05% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 12 | 75.00% | 25.00% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805547989 | C->T | INTERGENIC | None |