Detailed information of SNP:
|
SNP ID:
sf0805556439(Gbrowse)
Chromosome: chr08 Position: 5556439 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 72.78% | 27.22% |
| All Indica | 789 | 64.13% | 35.87% |
| All Japonica | 496 | 98.39% | 1.61% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 370 | 72.43% | 27.57% |
| Indica II | 209 | 52.63% | 47.37% |
| Indica Intermediate | 210 | 60.95% | 39.05% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805556439 | A->G | INTERGENIC | None |