Detailed information of SNP:
|
SNP ID:
sf0805561559(Gbrowse)
Chromosome: chr08 Position: 5561559 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 93.04% | 6.96% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 486 | 80.66% | 19.34% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 333 | 87.69% | 12.31% |
| Tropical Japonica | 93 | 53.76% | 46.24% |
| Japonica Intermediate | 60 | 83.33% | 16.67% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805561559 | A->T | INTERGENIC | None |