Detailed information of SNP:
SNP ID:
sf0805561875(Gbrowse)
Chromosome: chr08 Position: 5561875 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1419 | 86.12% | 13.88% |
All Indica | 799 | 83.73% | 16.27% |
All Japonica | 497 | 100.00% | 0.00% |
Aus | 67 | 20.90% | 79.10% |
Indica I | 375 | 80.53% | 19.47% |
Indica II | 213 | 94.84% | 5.16% |
Indica Intermediate | 211 | 78.20% | 21.80% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 78.57% | 21.43% |
Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0805561875 | G->A | INTERGENIC | None |