Detailed information of SNP:
|
SNP ID:
sf0805564696(Gbrowse)
Chromosome: chr08 Position: 5564696 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 74.68% | 25.32% |
| All Indica | 797 | 79.30% | 20.70% |
| All Japonica | 494 | 61.13% | 38.87% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 68.80% | 31.20% |
| Indica II | 212 | 94.81% | 5.19% |
| Indica Intermediate | 210 | 82.38% | 17.62% |
| Temperate Japonica | 332 | 50.30% | 49.70% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805564696 | G->A | INTERGENIC | None |