Detailed information of SNP:
|
SNP ID:
sf0805564855(Gbrowse)
Chromosome: chr08 Position: 5564855 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 71.38% | 28.62% |
| All Indica | 795 | 60.88% | 39.12% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 371 | 69.00% | 31.00% |
| Indica II | 213 | 48.83% | 51.17% |
| Indica Intermediate | 211 | 58.77% | 41.23% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805564855 | A->T | INTERGENIC | None |