Detailed information of SNP:
|
SNP ID:
sf0805568285(Gbrowse)
Chromosome: chr08 Position: 5568285 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 84.84% | 15.16% |
| All Indica | 799 | 83.23% | 16.77% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 4.55% | 95.45% |
| Indica I | 375 | 81.07% | 18.93% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 77.25% | 22.75% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805568285 | G->A | INTERGENIC | None |