Detailed information of SNP:
|
SNP ID:
sf0805573633(Gbrowse)
Chromosome: chr08 Position: 5573633 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 79.46% | 20.54% |
| All Indica | 797 | 74.03% | 25.97% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 374 | 77.27% | 22.73% |
| Indica II | 212 | 76.89% | 23.11% |
| Indica Intermediate | 211 | 65.40% | 34.60% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805573633 | A->T | INTERGENIC | None |