Detailed information of SNP:
|
SNP ID:
sf0805579018(Gbrowse)
Chromosome: chr08 Position: 5579018 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 74.04% | 25.96% |
| All Indica | 796 | 78.77% | 21.23% |
| All Japonica | 484 | 59.71% | 40.29% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 67.73% | 32.27% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 208 | 81.73% | 18.27% |
| Temperate Japonica | 326 | 49.39% | 50.61% |
| Tropical Japonica | 91 | 86.81% | 13.19% |
| Japonica Intermediate | 67 | 73.13% | 26.87% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805579018 | G->A | INTERGENIC | None |