Detailed information of SNP:
|
SNP ID:
sf0805579343(Gbrowse)
Chromosome: chr08 Position: 5579343 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1358 | 50.59% | 49.41% |
| All Indica | 754 | 71.35% | 28.65% |
| All Japonica | 486 | 9.26% | 90.74% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 352 | 60.51% | 39.49% |
| Indica II | 207 | 86.47% | 13.53% |
| Indica Intermediate | 195 | 74.87% | 25.13% |
| Temperate Japonica | 330 | 3.33% | 96.67% |
| Tropical Japonica | 91 | 24.18% | 75.82% |
| Japonica Intermediate | 65 | 18.46% | 81.54% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 39 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805579343 | A->T | INTERGENIC | None |