Detailed information of SNP:
|
SNP ID:
sf0805594737(Gbrowse)
Chromosome: chr08 Position: 5594737 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1373 | 62.05% | 37.95% |
| All Indica | 758 | 93.67% | 6.33% |
| All Japonica | 496 | 9.07% | 90.93% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 373 | 95.71% | 4.29% |
| Indica II | 189 | 92.06% | 7.94% |
| Indica Intermediate | 196 | 91.33% | 8.67% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 26.60% | 73.40% |
| Japonica Intermediate | 67 | 22.39% | 77.61% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 38 | 63.16% | 36.84% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805594737 | C->T | INTERGENIC | None |