Detailed information of SNP:
|
SNP ID:
sf0805607839(Gbrowse)
Chromosome: chr08 Position: 5607839 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 96.67% | 3.33% |
| All Indica | 797 | 98.37% | 1.63% |
| All Japonica | 495 | 97.17% | 2.83% |
| Aus | 64 | 79.69% | 20.31% |
| Indica I | 373 | 99.46% | 0.54% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 93.55% | 6.45% |
| Japonica Intermediate | 67 | 91.04% | 8.96% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805607839 | C->T | INTERGENIC | None |