Detailed information of SNP:
|
SNP ID:
sf0805622362(Gbrowse)
Chromosome: chr08 Position: 5622362 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 64.69% | 35.31% |
| All Indica | 798 | 94.11% | 5.89% |
| All Japonica | 493 | 10.34% | 89.66% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 80.28% | 19.72% |
| Indica Intermediate | 210 | 98.10% | 1.90% |
| Temperate Japonica | 331 | 2.11% | 97.89% |
| Tropical Japonica | 94 | 28.72% | 71.28% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805622362 | T->G | INTERGENIC | None |