Detailed information of SNP:
|
SNP ID:
sf0805635204(Gbrowse)
Chromosome: chr08 Position: 5635204 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 96.36% | 3.64% |
| All Indica | 793 | 99.87% | 0.13% |
| All Japonica | 487 | 89.94% | 10.06% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 208 | 99.52% | 0.48% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 325 | 86.46% | 13.54% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805635204 | T->C | LOC_Os08g09750(LOC_Os08g09750.1) | UTR_3_PRIME |