Detailed information of SNP:
|
SNP ID:
sf0805644211(Gbrowse)
Chromosome: chr08 Position: 5644211 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1406 | 89.26% | 10.74% |
| All Indica | 799 | 88.61% | 11.39% |
| All Japonica | 485 | 97.32% | 2.68% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 375 | 92.27% | 7.73% |
| Indica II | 213 | 84.04% | 15.96% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 330 | 99.70% | 0.30% |
| Tropical Japonica | 92 | 93.48% | 6.52% |
| Japonica Intermediate | 63 | 90.48% | 9.52% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805644211 | A->G | INTERGENIC | None |